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Given a gene id or gene symbol, retrieve the chromosomal coordinates.
Given a gene id or symbol, retrieve GO terms. Be sure to view the Qualifier column for genes annotated as "NOT".
Given a chromosome id and coordinates, retrieve genes.
Given a gene id or symbol in the selected organism, retrieve homologues. Optionally select homologue type and organism.
Given a gene id or symbol, retrieve pathways. The pathway data sources retrieved may be affected by the input id (RefSeq, Ensembl or gene symbol).
Given a SNP rsID, retrieve chromosome location.
Given an Ensembl gene id, retrieve variants and their consequences.
Given gene id or symbol, retrieve interacting genes.
Given a SNP rsID and organism, retrieve gene. No rows will be returned if the SNP is not within a gene.
Given a gene source (e.g. RefSeq or Ensembl), retrieve all gene ids. Use this to create a single-gene-set background list for enrichment.
Given a gene id or symbol, retrieve publications.
Given a GO term (e.g. DNA binding) or GO identifier (e.g. GO:0003677), retrieve genes. Wildcards (*) are allowed (e.g. *muscle*).
Given a chromosome id, retrieve genes and their locations.
Given a SNP alias ID, such as ssID or an array id, retrieve dbSNP rsID.
Given a gene id or symbol, retrieve transcript ids, locations and exon locations.
Given a bovine, pig, sheep or chicken trait, retrieve QTL id (AnimalQTLdb) and chromosomal location.
Given a gene id, retrieve proteins (UniProt) and protein domains.
Given a gene id or symbol from one organism, retrieve homologues and pathways. Optionally select homologue type and organism. Check the Data Source page to find out which organisms have homologues and pathways.
Given an organism, retrieve all protein ids (UniProt).
Given an organism, retrieve all transcripts with genes and database cross references. Multiple gene sets may be retrieved, and can be filtered in the output.
Given dbSNP rsID, retrieve SNP Alias IDS and sources.
Given a gene id, retrieve database cross reference id (e.g. RefSeq to Ensembl or vice versa).
Given a gene id or symbol, retrieve Reactome pathways.
Given an organism and gene set, retrieve all genes and their locations.
Given a bovine, pig, sheep or chicken trait, retrieve AnimalQTLdb QTL.
Given a gene id or gene symbol, retrieve proteins (UniProt).
Given a protein id (UniProt), retrieve genes and GO.
Given a bovine, pig, sheep or chicken QTL id (AnimalQTLdb), retrieve genes within QTL region. You can create a gene list to use in a gene template query. No rows will be returned if there are no genes.
Given a bovine, pig, sheep or chicken QTL id from AnimalQTLdb, retrieve trait and Vertebrate Trait Ontology.
Given a bovine, pig, sheep or chicken QTL id (AnimalQTLdb), retrieve transcripts within QTL region. No rows will be returned if there are no transcripts.
Given a non-human Gene id, retrieve human homologues and pathway information for those homologues. Optionally select homologue type.
Given a genome assembly version, retrieve primary chromosome ids used in FAANGMine, alternative ids and chromosome lengths.
Given a gene id or symbol, retrieve homologues.
Retrieve all gene ids and database cross reference ids for the specified organism and gene source.
Given a protein id (UniProt), retrieve publications.
Given a gene id or symbol in the selected organism, retrieve human orthologues.
Given a trait and organism, retrieve VTO term. Remove trait name constraint to retrieve all traits and VTO terms.
Given an organism, retrieve UniProt proteins with publications.
Given a gene id, retrieve gene symbol and description.
Given a transcript id, retrieve gene id.
Given a gene id or symbol, retrieve transcript ids and coding sequences.
Given a transcript id, retrieve protein id (from gene set, not UniProt).
Given a gene id, retrieve transcript id(s).
Given protein domain name (InterPro), retrieve information about protein domains. Wildcards (*) are allowed.
Given a bovine, pig, sheep or chicken QTL ID from AnimalQTLdb, retrieve SNPs within the QTL region.
For a given organism, retrieve all mRNAs and proteins along with their lengths. All gene sources are provided.
Given an Ensembl transcript ID, retrieve non-synonymous coding variants.
Given a gene id or symbol, retrieve transcript and protein ids (from the gene set, not UniProt).
Given a transcript ID, retrieve gene id and GO terms.
Given a transcript id, retrieve gene id and pathways.
Given an organism, retrieve all miRNAs and their locations.
Given an organism, retrieve all QTL ids, along with traits and chromosome locations.
Given a gene id, retrieve transcripts.
Given an InterPro id, retrieve proteins and genes.
Given a gene id, retrieve transcripts and proteins.
Given a protein id (UniProt), retrieve corresponding gene and location of gene.
Given a chromosome id and coordinates, retrieve miRNAs.
Given a gene source and organism, retrieve all gene ids, gene symbols and transcript ids.
Given a transcript id, retrieve protein id.
Given a gene symbol, retrieve gene id from the specified gene set.
Given a gene id, retrieve publications.
Given an InterPro protein domain name, retrieve proteins and genes for an organism. Wildcards (*) are allowed.